About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_882602_882744_F

Intron Information:

Intron Rank:
140449
Intron Class:
major
Intron Phase:
Intron Coordinates:
882602 - 882744
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCACTGAA
5'SS Class:
major
3'SS Sequence:
TCTTATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GGGATCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.4
68.5
38.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
84.1
0.77
0.8
77.1
36.8
Minor 5ss
33
-1.9
3.1
40.9
45.4
Minor BPS
49.4
0.03
1.6
61.71
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025575
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035678
882436 - 883856
1421