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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8834682_8836786_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8834682 - 8836786
Intron Length:
2105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CTGTCCTTCACA
Flanking Amino Acid:
LLDPSLLHGEGGYYLTSAYG
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
75.8
34.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
77.7
0.62
0.8
71.8
32.7
Minor 5ss
41.4
-1
3.3
58.9
45.9
Minor BPS
68
0.56
1.8
74.81
43.1

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018188
8694950 - 8840228
145279
ENSAPLT00000036550
8694950 - 8840228
145279
ENSAPLT00000015501
8793175 - 8840923
47749
ENSAPLT00000025864
8694950 - 8840228
145279
ENSAPLT00000013593
8694950 - 8840228
145279
ENSAPLT00000024235
8703119 - 8840228
137110
ENSAPLT00000021743
8755717 - 8840228
84512
ENSAPLT00000044933
8755717 - 8840923
85207