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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8836951_8839916_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8836951 - 8839916
Intron Length:
2966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCCC
5'SS Class:
major
3'SS Sequence:
TCTTATTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTTCTTATTC
Flanking Amino Acid:
RTIPSVDDFQNYLRVAFQEV
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.1
55.4
40.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.9
0.81
0.8
80.2
31.6
Minor 5ss
30.3
-2.3
3.5
42.7
44.4
Minor BPS
66.7
0.51
1.5
74.49
36.5

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018188
8694950 - 8840228
145279
ENSAPLT00000036550
8694950 - 8840228
145279
ENSAPLT00000015501
8793175 - 8840923
47749
ENSAPLT00000025864
8694950 - 8840228
145279
ENSAPLT00000013593
8694950 - 8840228
145279
ENSAPLT00000024235
8703119 - 8840228
137110
ENSAPLT00000021743
8755717 - 8840228
84512
ENSAPLT00000044933
8755717 - 8840923
85207