Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88433765_88464495_R

Intron Information:

Intron Rank:

141094

Intron Class:

major

Intron Phase:

Intron Coordinates:

88433765 - 88464495

Intron Length:

30731

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGACCCAG

5'SS Class:

major

3'SS Sequence:

TTTTTAATTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATCTTTTTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.45

1.2

55.8

44.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

88.6

0.87

0.8

86.6

31.3

Minor 5ss

37.3

-1.4

46.7

48.6

Minor BPS

73.5

0.82

1.1

81.14

35.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023242

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034683

88431745 - 88464676

32932