About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8852285_8857246_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8852285 - 8857246
Intron Length:
4962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTAGTATG
5'SS Class:
major
3'SS Sequence:
TCTGTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATGAATA
Flanking Amino Acid:
RRTRQRTSKNGKRALEKDSD
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
75.6
39.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80
0.68
0.8
73.1
32
Minor 5ss
35.8
-1.6
2.6
41.4
38.8
Minor BPS
58.7
0.27
1.7
69.72
35.7

Associated Gene:

Gene:
APLF
Ensembl Gene ID:
ENSAPLG00000009117
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009492
8852079 - 8874658
22580