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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88564689_88574376_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88564689 - 88574376
Intron Length:
9688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTCCTCTTCACT
Flanking Amino Acid:
IEFSSSASHTASSTEPDINS
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
79.1
36.4
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
79.4
0.66
0.8
73.6
30.3
Minor 5ss
36.3
-1.5
3.3
49.4
46.6
Minor BPS
63.5
0.51
1.8
80.65
41.4

Associated Gene:

Gene:
LGSN
Ensembl Gene ID:
ENSAPLG00000006068
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033982
88561466 - 88607426
45961
ENSAPLT00000032826
88561466 - 88583407
21942
ENSAPLT00000006285
88561466 - 88616499
55034