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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8857286_8858629_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8857286 - 8858629
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TAACTTTTATTT
Flanking Amino Acid:
KLEYKHTAPPGTGRRTRQRT
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.3
31.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.3
0.82
0.7
85.7
28.8
Minor 5ss
38.3
-1.3
3
49.1
46.6
Minor BPS
52
0.14
1.5
66.83
38.2

Associated Gene:

Gene:
APLF
Ensembl Gene ID:
ENSAPLG00000009117
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009492
8852079 - 8874658
22580