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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88575365_88582913_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88575365 - 88582913
Intron Length:
7549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTATATTTTATT
Flanking Amino Acid:
MNEKEDLTQENTSGIANDEV
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.2
0.57
1
68.8
41.9
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
51.1
0.12
1.8
70.32
40.9

Associated Gene:

Gene:
LGSN
Ensembl Gene ID:
ENSAPLG00000006068
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032826
88561466 - 88583407
21942