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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88575365_88606647_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
88575365 - 88606647
Intron Length:
31283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCATA
5'SS Class:
major
3'SS Sequence:
TTGCTGGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTATATTTTATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.1
78
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.2
0.57
1
68.8
41.9
Minor 5ss
48.5
-0.1
2.6
66.3
44.7
Minor BPS
51.1
0.12
1.8
70.32
40.9

Associated Gene:

Gene:
LGSN
Ensembl Gene ID:
ENSAPLG00000006068
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033982
88561466 - 88607426
45961