Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8861139_8866900_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8861139 - 8866900

Intron Length:

5762

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAACAA

5'SS Class:

strong_major

3'SS Sequence:

TCATCTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TTCTCAATAAAC

Flanking Amino Acid:

TPCMYGTGCYRKNPIHFQQF

Intron Amino Acid Position:

369

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

70.2

35.7

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

85.1

0.79

0.8

80.3

31.4

Minor 5ss

30.6

-2.2

3.1

38.6

46.4

Minor BPS

52.5

0.06

70.19

40.5

Associated Gene:

Gene:

APLF

Ensembl Gene ID:

ENSAPLG00000009117

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009492

8852079 - 8874658

22580