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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88615000_88616213_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
88615000 - 88616213
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CCAAAATTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATTAACTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
61.8
0.27
1
53.2
40
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
48.9
-0
2
68.08
37.6

Associated Gene:

Gene:
LGSN
Ensembl Gene ID:
ENSAPLG00000006068
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006285
88561466 - 88616499
55034