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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8867290_8869978_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8867290 - 8869978
Intron Length:
2689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TCGTTCAAAATG
Flanking Amino Acid:
RSCLSSPSSENASGFPLEST
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
77.5
0.62
0.8
71.6
33
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
45.9
-0.4
1.9
50.95
44.2

Associated Gene:

Gene:
APLF
Ensembl Gene ID:
ENSAPLG00000009117
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009492
8852079 - 8874658
22580