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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88675907_88677252_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88675907 - 88677252
Intron Length:
1346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTACTCTTAAAA
Flanking Amino Acid:
TNATLNKFIEELKKYGVTTV
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.1
0.54
0.8
66.5
35.3
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
68.8
0.59
1.3
75.09
35.4

Associated Gene:

Gene:
PTP4A1
Ensembl Gene ID:
ENSAPLG00000006095
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006325
88667992 - 88680997
13006