Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88677346_88677689_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

88677346 - 88677689

Intron Length:

344

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

CGTTATATTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATTAT

U12 Branch Point Sequence:

TTCTATGTAATT

Flanking Amino Acid:

PVEKEGIQVLDWPFDDGAPP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.5

Major BPS

76.9

0.67

66.3

40.4

Major PPT

72.6

0.51

0.9

65.9

39.4

Minor 5ss

37.6

-1.4

2.8

48.3

42.5

Minor BPS

52.1

0.14

2.2

76.08

41.4

Associated Gene:

Gene:

PTP4A1

Ensembl Gene ID:

ENSAPLG00000006095

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006325

88667992 - 88680997

13006