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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88677821_88679246_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88677821 - 88679246
Intron Length:
1426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGTAGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTAACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
IAVHCVAGLGRAPVLVALAL
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
69.1
43.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.9
0.74
0.9
78.8
38.7
Minor 5ss
31.1
-2.2
3.1
42.2
44.7
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
PTP4A1
Ensembl Gene ID:
ENSAPLG00000006095
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006325
88667992 - 88680997
13006