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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88679322_88680313_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88679322 - 88680313
Intron Length:
992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTCTTCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
KYEDAVQFIRQKRRGAFNSK
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
79.1
0.65
0.8
78.4
29.3
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
PTP4A1
Ensembl Gene ID:
ENSAPLG00000006095
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006325
88667992 - 88680997
13006