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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88680403_88680875_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
88680403 - 88680875
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCACCGAA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAT
U12 Branch Point Sequence:
TGGACCTTACTT
Flanking Amino Acid:
KMRLRFKDSNVISILKNMAS
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.2
0.08
1.4
52.1
41.1
Major BPS
67.4
0.43
1.1
57.4
41.4
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
36.7
-1.5
3.2
43.9
45.7
Minor BPS
59.8
0.39
1.7
73.32
43.7

Associated Gene:

Gene:
PTP4A1
Ensembl Gene ID:
ENSAPLG00000006095
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006325
88667992 - 88680997
13006