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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88712200_88713331_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88712200 - 88713331
Intron Length:
1132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCACT
5'SS Class:
major
3'SS Sequence:
TTTACCTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TTCTCTTTACCT
Flanking Amino Acid:
PRKSPRLMAQEPVRSLRQST
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
73.3
37.3
Major BPS
74
0.6
1
65.6
41.1
Major PPT
77.8
0.63
0.8
72.9
31.9
Minor 5ss
36.6
-1.5
2.9
50
45.9
Minor BPS
73.1
0.8
1.6
87.23
39

Associated Gene:

Gene:
PHF3
Ensembl Gene ID:
ENSAPLG00000006219
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025702
88702478 - 88742282
39805
ENSAPLT00000006472
88702478 - 88746528
44051
ENSAPLT00000033570
88709813 - 88746528
36716
ENSAPLT00000033108
88702504 - 88742213
39710