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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8872353_8873197_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8872353 - 8873197
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAATA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTTTGTTCAACA
Flanking Amino Acid:
ISAHPVESTVRNNPEVGAEA
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.2
73.4
37.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.6
0.76
0.9
84.6
36
Minor 5ss
48.7
-0.1
2.6
66.5
44.5
Minor BPS
56.9
0.21
2
72.25
39.9

Associated Gene:

Gene:
APLF
Ensembl Gene ID:
ENSAPLG00000009117
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009492
8852079 - 8874658
22580