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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88728623_88728736_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88728623 - 88728736
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAATA
5'SS Class:
major
3'SS Sequence:
TGTTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TATTTGGTAATT
Flanking Amino Acid:
KQSLKEILMKRLTDSSLKIP
Intron Amino Acid Position:
976

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
75.8
33.1
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
85.1
0.79
0.8
80.1
32
Minor 5ss
42.5
-0.8
3
57.4
46.9
Minor BPS
48.4
-0
2.5
76.1
41.2

Associated Gene:

Gene:
PHF3
Ensembl Gene ID:
ENSAPLG00000006219
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033108
88702504 - 88742213
39710
ENSAPLT00000025702
88702478 - 88742282
39805
ENSAPLT00000006472
88702478 - 88746528
44051
ENSAPLT00000033570
88709813 - 88746528
36716