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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88728894_88729855_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88728894 - 88729855
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
CAATAGTTAATT
Flanking Amino Acid:
MFNLKDPKNNILFKKVLKGE
Intron Amino Acid Position:
1029

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
48.7
-0
2.2
66.88
43.8

Associated Gene:

Gene:
PHF3
Ensembl Gene ID:
ENSAPLG00000006219
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033108
88702504 - 88742213
39710
ENSAPLT00000025702
88702478 - 88742282
39805
ENSAPLT00000006472
88702478 - 88746528
44051
ENSAPLT00000033570
88709813 - 88746528
36716