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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88732024_88732474_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88732024 - 88732474
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAAAC
5'SS Class:
major
3'SS Sequence:
TGACTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
AATGTTTTGACT
Flanking Amino Acid:
MKEQEVMEIQEPNMTKMFEK
Intron Amino Acid Position:
1111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
68.4
36.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
71.3
0.48
0.8
69.9
36.3
Minor 5ss
31.7
-2.1
3.3
42.3
44.8
Minor BPS
61.2
0.43
1.3
73.12
38.1

Associated Gene:

Gene:
PHF3
Ensembl Gene ID:
ENSAPLG00000006219
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006472
88702478 - 88746528
44051
ENSAPLT00000033570
88709813 - 88746528
36716
ENSAPLT00000033108
88702504 - 88742213
39710
ENSAPLT00000025702
88702478 - 88742282
39805