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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88732611_88732989_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88732611 - 88732989
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCGTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATAAAAC
Flanking Amino Acid:
LFDLNCKICIGRMAPPTDDI
Intron Amino Acid Position:
1156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.4
0.73
0.8
77.1
31.6
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
46.9
-0.2
2.1
64.68
40.1

Associated Gene:

Gene:
PHF3
Ensembl Gene ID:
ENSAPLG00000006219
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033108
88702504 - 88742213
39710
ENSAPLT00000025702
88702478 - 88742282
39805
ENSAPLT00000006472
88702478 - 88746528
44051
ENSAPLT00000033570
88709813 - 88746528
36716