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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88733183_88735712_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88733183 - 88735712
Intron Length:
2530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATATAA
5'SS Class:
major
3'SS Sequence:
TGTCTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACGTTCTAAACA
Flanking Amino Acid:
DLSKSFSPLPKSETPGTVEC
Intron Amino Acid Position:
1220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
69.6
30.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89.8
0.9
0.7
88.2
29.1
Minor 5ss
39
-1.2
3.1
47.6
42.4
Minor BPS
58.8
0.27
1.7
64.64
42.3

Associated Gene:

Gene:
PHF3
Ensembl Gene ID:
ENSAPLG00000006219
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006472
88702478 - 88746528
44051
ENSAPLT00000033570
88709813 - 88746528
36716
ENSAPLT00000033108
88702504 - 88742213
39710
ENSAPLT00000025702
88702478 - 88742282
39805