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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88735861_88737340_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
88735861 - 88737340
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTACA
5'SS Class:
major
3'SS Sequence:
TCCTTACTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTCCTTACTC
Flanking Amino Acid:
VSGSFEYLTEDLPDSIQVGG
Intron Amino Acid Position:
1270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
75.2
34
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.1
0.54
0.8
68.9
30.5
Minor 5ss
42.2
-0.9
2.4
52.6
43.9
Minor BPS
71.2
0.65
1.6
77.89
38.6

Associated Gene:

Gene:
PHF3
Ensembl Gene ID:
ENSAPLG00000006219
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033570
88709813 - 88746528
36716
ENSAPLT00000033108
88702504 - 88742213
39710
ENSAPLT00000025702
88702478 - 88742282
39805
ENSAPLT00000006472
88702478 - 88746528
44051