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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88738832_88740045_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88738832 - 88740045
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CAATTTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TTTGCTGTTACA
Flanking Amino Acid:
PHHLVPFDGPGIELHRPNLL
Intron Amino Acid Position:
1365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81
33
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
74
0.54
1
69.1
41.3
Minor 5ss
36.5
-1.5
2.7
44.7
42.7
Minor BPS
48.6
-0.1
2.4
70.62
41.9

Associated Gene:

Gene:
PHF3
Ensembl Gene ID:
ENSAPLG00000006219
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006472
88702478 - 88746528
44051
ENSAPLT00000033570
88709813 - 88746528
36716
ENSAPLT00000033108
88702504 - 88742213
39710
ENSAPLT00000025702
88702478 - 88742282
39805