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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88803046_88851248_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88803046 - 88851248
Intron Length:
48203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTAAATTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATT
Flanking Amino Acid:
HPCHNGGTCTSDAENWFCEC
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.7
0.65
1
69.7
45.3
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
78.1
0.96
1
86.75
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001025
88746161 - 89190405
444245