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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88855378_88892068_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88855378 - 88892068
Intron Length:
36691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTAAT
U12 Branch Point Sequence:
GTGGCATAAACA
Flanking Amino Acid:
SKGILIPITISYMLPVSSPE
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
64.3
0.36
1.2
65.3
38.6
Major PPT
86.2
0.81
0.8
77.7
36.7
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
48.1
-0.1
2
61.04
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001025
88746161 - 89190405
444245