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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88892223_88904007_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88892223 - 88904007
Intron Length:
11785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
TTGTTTTCAAAG
Flanking Amino Acid:
TTALSGTILYTSEKHFGEQF
Intron Amino Acid Position:
555

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
64.9
0.37
1
61
37.5
Major PPT
76.3
0.59
1
78.1
34.2
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
52.4
-0
1.7
60.15
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001025
88746161 - 89190405
444245