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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88904173_88956421_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88904173 - 88956421
Intron Length:
52249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTGTG
5'SS Class:
major
3'SS Sequence:
TTATTCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGTTATTCATT
Flanking Amino Acid:
LHFTGRFCEKDTALFFPSFT
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
69
42.1
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.7
0.76
0.8
78.4
34.4
Minor 5ss
35
-1.7
3.5
48.8
47.4
Minor BPS
52.4
0.16
2
76.18
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001025
88746161 - 89190405
444245