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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8895410_8896291_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8895410 - 8896291
Intron Length:
882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGGAAC
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ACTTCCTTATTT
Flanking Amino Acid:
VVTAVEDMPDSKKCDVENNL
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
66.4
39.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.3
0.73
0.7
78.1
23.9
Minor 5ss
35.5
-1.6
3.3
52.9
44.1
Minor BPS
70.8
0.73
1.6
82.08
39.9

Associated Gene:

Gene:
PLEK
Ensembl Gene ID:
ENSAPLG00000009140
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021949
8895270 - 8929397
34128
ENSAPLT00000018726
8894469 - 8912153
17685
ENSAPLT00000047323
8894469 - 8912153
17685
ENSAPLT00000009538
8895270 - 8948071
52802
ENSAPLT00000036791
8894267 - 8915631
21365
ENSAPLT00000023990
8894267 - 8941285
47019