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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88956652_88981900_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
88956652 - 88981900
Intron Length:
25249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTCTTTATCC
Flanking Amino Acid:
AVRRNNIDNCRTPVPTHLPT
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.7
34.8
Major BPS
100
1.24
0.5
100
0
Major PPT
88.1
0.86
0.7
85.5
29
Minor 5ss
43.5
-0.7
3
58.3
46.6
Minor BPS
70.4
0.62
1.6
77.87
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001025
88746161 - 89190405
444245