About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8896362_8897597_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8896362 - 8897597
Intron Length:
1236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGATAC
5'SS Class:
major
3'SS Sequence:
TTATCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GATTTCTTATCT
Flanking Amino Acid:
AYLHYYDPAGGEDPLGAIHL
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
65.8
34.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.7
0.69
0.8
73.6
36.7
Minor 5ss
39.5
-1.2
3.1
47.3
42.5
Minor BPS
68.9
0.67
1.6
81.75
39.5

Associated Gene:

Gene:
PLEK
Ensembl Gene ID:
ENSAPLG00000009140
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023990
8894267 - 8941285
47019
ENSAPLT00000021949
8895270 - 8929397
34128
ENSAPLT00000018726
8894469 - 8912153
17685
ENSAPLT00000047323
8894469 - 8912153
17685
ENSAPLT00000009538
8895270 - 8948071
52802
ENSAPLT00000036791
8894267 - 8915631
21365