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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8897682_8900634_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8897682 - 8900634
Intron Length:
2953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TTATTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
LDLSDAYYYFGHRRKNWKVR
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
76.1
32.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.2
0.84
0.7
81.4
36.1
Minor 5ss
35.7
-1.6
3.5
55
43.6
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
PLEK
Ensembl Gene ID:
ENSAPLG00000009140
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047323
8894469 - 8912153
17685