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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8899167_8900634_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8899167 - 8900634
Intron Length:
1468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TGTGGTCATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTCAT
U12 Branch Point Sequence:
ATTTGTGTAACT
Flanking Amino Acid:
LDLSDAYYYFPDSGFYCEGN
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
76.1
32.8
Major BPS
69.7
0.49
1.3
71.4
45.1
Major PPT
69.7
0.44
1
62.7
43.4
Minor 5ss
35.7
-1.6
3.5
55
43.6
Minor BPS
54.6
0.22
2.4
81.74
40.3

Associated Gene:

Gene:
PLEK
Ensembl Gene ID:
ENSAPLG00000009140
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021949
8895270 - 8929397
34128
ENSAPLT00000018726
8894469 - 8912153
17685
ENSAPLT00000009538
8895270 - 8948071
52802
ENSAPLT00000036791
8894267 - 8915631
21365
ENSAPLT00000023990
8894267 - 8941285
47019