Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_89013718_89029091_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

89013718 - 89029091

Intron Length:

15374

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TAAATTTATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

CATTTCTAAATT

Flanking Amino Acid:

DDGHWYKVQIRQGMVPCEAE

Intron Amino Acid Position:

335

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.4

1.14

0.6

94.3

17.7

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

72.1

0.5

66.5

43.6

Minor 5ss

38.6

-1.3

3.4

57.8

46.8

Minor BPS

62.8

0.48

1.7

76.1

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000001044

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001025

88746161 - 89190405

444245