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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8902623_8907825_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8902623 - 8907825
Intron Length:
5203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATGTTTATCC
Flanking Amino Acid:
SPCQDFGKRTFVFKLTAAKQ
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.9
88.2
28.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.1
0.86
0.7
85.5
29
Minor 5ss
46.6
-0.3
2.9
68.1
42.7
Minor BPS
55.5
0.15
2
70.76
40.9

Associated Gene:

Gene:
PLEK
Ensembl Gene ID:
ENSAPLG00000009140
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023990
8894267 - 8941285
47019
ENSAPLT00000021949
8895270 - 8929397
34128
ENSAPLT00000018726
8894469 - 8912153
17685
ENSAPLT00000047323
8894469 - 8912153
17685
ENSAPLT00000009538
8895270 - 8948071
52802
ENSAPLT00000036791
8894267 - 8915631
21365