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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_89031062_89111477_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
89031062 - 89111477
Intron Length:
80416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATCTCTCAAAA
Flanking Amino Acid:
PDFHAEEMSQDFSYARYYGD
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.4
0.68
0.8
73.3
35.5
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
56.1
0.19
1.6
67.86
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001025
88746161 - 89190405
444245