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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8907982_8911564_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8907982 - 8911564
Intron Length:
3583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TACACCATGATT
Flanking Amino Acid:
RIREGYLVKKGSMFNTWKPM
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.9
76.9
38.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.5
0.64
1
73.8
40.7
Minor 5ss
30.9
-2.2
3.6
46.8
48.5
Minor BPS
53.3
0.18
1.7
69.81
41.1

Associated Gene:

Gene:
PLEK
Ensembl Gene ID:
ENSAPLG00000009140
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021949
8895270 - 8929397
34128
ENSAPLT00000018726
8894469 - 8912153
17685
ENSAPLT00000047323
8894469 - 8912153
17685
ENSAPLT00000009538
8895270 - 8948071
52802
ENSAPLT00000036791
8894267 - 8915631
21365
ENSAPLT00000023990
8894267 - 8941285
47019