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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_89111725_89118526_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
89111725 - 89118526
Intron Length:
6802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGATGC
5'SS Class:
major
3'SS Sequence:
AATTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTCTTTTTAAAA
Flanking Amino Acid:
YSCFCKPGFVGRSCELNYND
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.7
36.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.7
0.71
0.8
78.2
35.3
Minor 5ss
33
-1.9
3
38.6
41
Minor BPS
64.2
0.44
1.4
68.55
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001044
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001025
88746161 - 89190405
444245