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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8911677_8911985_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8911677 - 8911985
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACACCAC
5'SS Class:
major
3'SS Sequence:
CTCTACCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
TGTGCTGTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
56.7
42.6
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
72
0.5
0.8
64.9
30.5
Minor 5ss
36.4
-1.5
3.3
50.1
46.4
Minor BPS
48.5
-0.1
2.2
64.9
41.7

Associated Gene:

Gene:
PLEK
Ensembl Gene ID:
ENSAPLG00000009140
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009538
8895270 - 8948071
52802