Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8912154_8940670_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

8912154 - 8940670

Intron Length:

28517

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGGCT

5'SS Class:

major

3'SS Sequence:

CTTGTATCAGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGATAAA

U12 Branch Point Sequence:

TTTTCTTGTATC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

38.8

Major BPS

63.5

0.33

1.2

64.3

39.6

Major PPT

0.5

67.3

38.1

Minor 5ss

-1.4

3.6

56.7

47.6

Minor BPS

59.6

0.28

1.8

35.7

Associated Gene:

Gene:

PLEK

Ensembl Gene ID:

ENSAPLG00000009140

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023990

8894267 - 8941285

47019