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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8918940_8919522_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8918940 - 8919522
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TGTCTCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GGCTGCTGAAAG
Flanking Amino Acid:
IALRPGTVQATTMGIGGVNV
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.3
75
35.3
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
81.6
0.71
0.8
76.6
32
Minor 5ss
34.4
-1.8
3.1
40.8
38.7
Minor BPS
44.8
-0.5
2
47.29
45

Associated Gene:

Gene:
CNRIP1
Ensembl Gene ID:
ENSAPLG00000022779
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018059
8918761 - 8924196
5436