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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8919668_8923288_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8919668 - 8923288
Intron Length:
3621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CATTTATTAACA
Flanking Amino Acid:
ERQPIQVNMQFNDIGTFETV
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.4
39.6
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
85.2
0.79
0.7
80
25.5
Minor 5ss
33.3
-1.9
3.5
49.7
46.5
Minor BPS
66.3
0.51
1.6
73.37
38.2

Associated Gene:

Gene:
CNRIP1
Ensembl Gene ID:
ENSAPLG00000022779
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018059
8918761 - 8924196
5436