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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8953273_8976137_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8953273 - 8976137
Intron Length:
22865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAGC
5'SS Class:
major
3'SS Sequence:
TTTTGTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
CTGGGAATAATT
Flanking Amino Acid:
MGNEASYPLEM
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.6
40
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
85.8
0.81
0.9
80.6
37
Minor 5ss
27.3
-2.6
3
30.8
36.9
Minor BPS
40.8
-0.6
2.2
57.29
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023228
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018180
8953270 - 8990488
37219