Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_89585815_89587902_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

89585815 - 89587902

Intron Length:

2088

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTAAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTTCTTTTAAAT

Flanking Amino Acid:

YECTCPPKFSGRNCTEIVGQ

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

82.4

30.8

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

75.3

0.57

0.9

34.5

Minor 5ss

58.1

0.27

2.3

39.6

Minor BPS

0.77

1.3

86.29

32.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003000

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003028

89581975 - 89666390

84416