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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_89588751_89665915_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
89588751 - 89665915
Intron Length:
77165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGAATTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTTTTCTCCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
71.2
0.48
0.9
62.9
43
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
59.2
0.37
2
83.48
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003000
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003028
89581975 - 89666390
84416