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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_89895536_89899263_F

Intron Information:

Intron Rank:
142071
Intron Class:
major
Intron Phase:
Intron Coordinates:
89895536 - 89899263
Intron Length:
3728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCCCA
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTGCTTTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
62.5
43.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
88
0.86
0.7
80.3
31.7
Minor 5ss
36.8
-1.5
3.3
48.2
47.5
Minor BPS
63.5
0.41
1.4
68.56
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026473
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021489
89895416 - 89904868
9453