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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8992242_8992799_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8992242 - 8992799
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
ATTTGCTGACTT
Flanking Amino Acid:
ARTAICNLILGSPPSKVYGN
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
49.6
0.05
2.1
75
42.1

Associated Gene:

Gene:
PNO1
Ensembl Gene ID:
ENSAPLG00000029102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022575
8988993 - 8996466
7474