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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8994962_8995959_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8994962 - 8995959
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGCC
5'SS Class:
major
3'SS Sequence:
TTGTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATGTTCTTAATT
Flanking Amino Acid:
NLKTRNVEIKTCQETKDLSA
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
65.5
34.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83
0.74
0.9
77.3
37
Minor 5ss
23.6
-3
3.5
32.2
42.8
Minor BPS
78.9
0.99
1.1
85.69
34.7

Associated Gene:

Gene:
PNO1
Ensembl Gene ID:
ENSAPLG00000029102
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022575
8988993 - 8996466
7474